Edited with 46.2

1) Toyota Outer Doorway still doesn't rotate (U44 bug)
2) Skinpack Daleks are still the old model

3) Copper exterior has the Toyota box blue on the handle

4) Coral platform is not transparent (New one, not the 1.7 one)

5) Toyota Bookshelf doesn't look right with anything

6) Toyota Corridors that spawn in the interior spawn in the walls.

7) The Hartnell interior door (bTEHartnellDoor2) is non walkthrough, while the Hellbent (bTEHellBentDoor) is walkthrough

I'll add more if I find more, but that's all I've found so far.